Which certificate template should I use for Domain Controllers

In fact, you have three possibilities:

  • Domain Controller (Windows Server 2000)
  • Domain Controller Authentication (Windows Server 2003)
  • Kerberos Authentication (Windows Server 2008 and above)

This explanation comes from Russell Tomkins a Microsoft Premier Field Engineer in a very good post which you can find here:

Creating Custom Secure LDAP Certificates for Domain Controllers with Auto Renewal

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